nichogenius dc60cea192 Bug Fixes, added time/checksum flags, organized ...

--Fixed a bug with the out function.  Previous updates of mine did not update all calls to the out function which I changed the parameters for.  Fixed this by replacing the out function with an 'error' function.
--Alphabetized function definitions and did some general tidying up
--Made all functions private except the constructor.
--Created parseArgs function to handle reading in options.
--Fixed a bug with 'extra-check' where htaccess and googleBot were being pushed to the pattern array each time a file was scanned. 
 This bug was created when I moved the pattern initialize code to the constructor.  Moved extra-check code with the rest of the initialize pattern calls.
--Added -no-color, -time, and -checksum flags.  I'd prefer if the output was only as spammy as the user requests.  Time should be helpful in tracing when the attack occurred and if files are related to the same hack.  Time and checksum do not display by default.  no-color flag makes it easier to dump to plain text files.

2017-08-19 12:57:49 -06:00

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