Files
spec-kit/src/specify_cli/shared_infra.py
T
Quratulain-bilalandGitHub 4a465431b8 fix: use missing_ok for temp file cleanup to avoid masking errors (#3803)
* fix(agent-context): recurse for nested plans in Python mtime fallback

The Python port's mtime fallback discovered plans with a one-level
specs/*/plan.md glob, so a scoped layout created via
SPECIFY_FEATURE_DIRECTORY (specs/<scope>/<feature>/plan.md) was missed when
feature.json is absent — the fallback returned no plan and the managed
context section omitted the 'at <plan>' line. The bash and PowerShell twins
were already fixed to recurse (#3024); the Python twin was left behind.

Switch to specs.rglob('plan.md') with the same symlink-safe containment check
the bash twin uses (resolve each candidate and confirm it stays within the
project root before ranking by mtime), so a plan reached through a specs/
symlink pointing outside the project is not selected.

Adds parity regression tests (vs bash and vs PowerShell) covering a nested
specs/<scope>/<feature>/plan.md; both fail on the pre-fix one-level glob.

Fixes #3733

* test(agent-context): cover symlink containment in the mtime fallback

The recursive fallback resolves each candidate before the relative_to()
containment check, but nothing exercised that path. Add a parity test for a
plan reachable only through a specs/ symlink pointing outside the project:
relative_to() is lexical and would accept it, emitting an in-project-looking
path for an out-of-project file. Both the bash twin and the Python port skip
it, so the "at <plan>" line is omitted.

Also correct the module docstring, which still described the fallback as
scanning specs/*/plan.md one level deep.

* fix: use missing_ok for temp file cleanup to avoid masking errors
2026-08-06 09:58:19 -05:00

766 lines
32 KiB
Python

"""Shared Spec Kit infrastructure installation helpers."""
from __future__ import annotations
import hashlib
import hmac
import logging
import os
import re
import tempfile
from pathlib import Path
from typing import Any
from .integrations.base import IntegrationBase
from .integrations.manifest import IntegrationManifest
logger = logging.getLogger(__name__)
# Managed ``.specify/.gitignore``. Keeps machine-local Spec Kit state out of
# version control while leaving shareable project files (specs, constitution,
# templates, scripts, extension config) tracked. Patterns are relative to the
# ``.specify/`` directory the file lives in.
SPECIFY_GITIGNORE_CONTENT = """\
# Machine-local Spec Kit state — not meant to be shared.
# Managed by the Specify CLI; safe to edit (your changes are preserved on refresh).
# Local pointer to the current feature directory. Rewritten every time you
# switch features, so it is per-checkout state rather than something to share.
feature.json
# Per-machine extension config overrides.
extensions/*/local-config.yml
"""
# Matches a SHA-256 digest in its normalized form: exactly 64 hexadecimal
# characters. Callers lowercase the declared value before matching (see
# ``expected_hex = raw.lower()`` below), so an uppercase digest is accepted and
# normalized rather than rejected.
_SHA256_HEX_RE = re.compile(r"^[0-9a-f]{64}$")
def verify_archive_sha256(
data: bytes,
expected: str | None,
name: str,
error_cls: type[Exception],
) -> None:
"""Verify downloaded archive bytes against a catalog-declared SHA-256.
Catalog entries may pin the expected digest of their release archive in a
``sha256`` field (optionally prefixed with ``"sha256:"``). When present, the
downloaded bytes must match before they are written to disk and installed,
so a corrupted or tampered archive is rejected even though the transport was
HTTPS. Entries without a declared digest are accepted unchanged, keeping the
check backwards compatible.
Args:
data: The raw downloaded archive bytes.
expected: The catalog-declared SHA-256 hex digest, or ``None``.
name: The extension/preset id, used in the error message.
error_cls: Exception type to raise on mismatch (e.g. ``ExtensionError``).
Raises:
error_cls: If ``expected`` is provided and is not a well-formed
SHA-256 hex digest, or does not match ``data``.
"""
# Skip only when no digest is declared at all (``None``). A declared but
# empty/blank value (e.g. ``sha256: ""``) is an authoring error, not an
# opt-out: let it fall through to the format check below so it is rejected
# rather than silently disabling verification.
if expected is None:
logger.debug(
"No sha256 declared for %r; archive integrity was not verified.",
name,
)
return
# Strip *only* a literal ``sha256:`` algorithm prefix (case-insensitive).
# Any other prefix is part of the value and must not be silently dropped,
# otherwise a malformed or wrong-algorithm digest (e.g. ``md5:...``) would
# be quietly accepted as if it were a valid SHA-256.
raw = str(expected).strip()
if raw[:7].lower() == "sha256:":
raw = raw[7:].strip()
expected_hex = raw.lower()
if not _SHA256_HEX_RE.match(expected_hex):
raise error_cls(
f"Invalid sha256 declared for {name!r}: expected 64 hexadecimal "
f"characters (optionally prefixed with 'sha256:'), got "
f"{expected!r}."
)
actual_hex = hashlib.sha256(data).hexdigest()
# Constant-time comparison: both sides are fixed-length hex digests, so use
# ``hmac.compare_digest`` to avoid leaking information through timing.
if not hmac.compare_digest(actual_hex, expected_hex):
raise error_cls(
f"Integrity check failed for {name!r}: the catalog declares "
f"sha256 {expected_hex}, but the downloaded archive is "
f"{actual_hex}. The archive may be corrupted or tampered with."
)
class SymlinkedSharedPathError(ValueError):
"""Raised when a shared infrastructure path or ancestor is a symlink.
Distinct from other unsafe-path errors so callers can preserve symlinked
destinations as customizations while still letting genuine safety errors
(e.g. path escape, not-a-directory) propagate and abort the operation.
"""
def load_speckit_manifest(
project_path: Path,
*,
version: str,
console: Any | None = None,
) -> IntegrationManifest:
"""Load the shared infrastructure manifest, preserving existing entries."""
manifest_path = project_path / ".specify" / "integrations" / "speckit.manifest.json"
if manifest_path.exists():
try:
manifest = IntegrationManifest.load("speckit", project_path)
manifest.version = version
return manifest
except (ValueError, FileNotFoundError, OSError, UnicodeDecodeError) as exc:
if console is not None:
console.print(
f"[yellow]Warning:[/yellow] Could not read shared infrastructure "
f"manifest at {manifest_path}: {exc}"
)
console.print(
"A new shared manifest will be created; previously tracked "
"shared files may be treated as untracked."
)
return IntegrationManifest("speckit", project_path, version=version)
def shared_templates_source(
*,
core_pack: Path | None,
repo_root: Path,
) -> Path:
"""Return the bundled/source shared templates directory."""
if core_pack and (core_pack / "templates").is_dir():
return core_pack / "templates"
return repo_root / "templates"
def shared_scripts_source(
*,
core_pack: Path | None,
repo_root: Path,
) -> Path:
"""Return the bundled/source shared scripts directory."""
if core_pack and (core_pack / "scripts").is_dir():
return core_pack / "scripts"
return repo_root / "scripts"
def _shared_destination_label(project_path: Path, dest: Path) -> str:
try:
return dest.relative_to(project_path).as_posix()
except ValueError:
return str(dest)
def _shared_relative_path(project_path: Path, dest: Path) -> Path:
try:
rel = dest.relative_to(project_path)
except ValueError:
label = _shared_destination_label(project_path, dest)
raise ValueError(f"Shared infrastructure path escapes project root: {label}") from None
if rel.is_absolute() or ".." in rel.parts:
label = _shared_destination_label(project_path, dest)
raise ValueError(f"Shared infrastructure path escapes project root: {label}")
return rel
def _ensure_safe_shared_directory(
project_path: Path,
directory: Path,
*,
create: bool = True,
context: str = "shared infrastructure directory",
) -> None:
"""Create a shared infra directory without following symlinked parents."""
root = project_path.resolve()
rel = _shared_relative_path(project_path, directory)
current = project_path
for part in rel.parts:
current = current / part
label = _shared_destination_label(project_path, current)
if current.is_symlink():
raise SymlinkedSharedPathError(f"Refusing to use symlinked {context}: {label}")
if current.exists():
if not current.is_dir():
raise ValueError(f"{context.capitalize()} path is not a directory: {label}")
try:
current.resolve().relative_to(root)
except (OSError, ValueError):
raise ValueError(f"{context.capitalize()} escapes project root: {label}") from None
continue
if not create:
raise ValueError(f"{context.capitalize()} does not exist: {label}")
current.mkdir()
if current.is_symlink():
raise SymlinkedSharedPathError(f"Refusing to use symlinked {context}: {label}")
try:
current.resolve().relative_to(root)
except (OSError, ValueError):
raise ValueError(f"{context.capitalize()} escapes project root: {label}") from None
def _validate_safe_shared_directory(project_path: Path, directory: Path) -> None:
"""Validate existing directory parents while allowing missing directories."""
root = project_path.resolve()
rel = _shared_relative_path(project_path, directory)
current = project_path
for part in rel.parts:
current = current / part
label = _shared_destination_label(project_path, current)
if current.is_symlink():
raise SymlinkedSharedPathError(f"Refusing to use symlinked shared infrastructure directory: {label}")
if not current.exists():
continue
if not current.is_dir():
raise ValueError(f"Shared infrastructure directory path is not a directory: {label}")
try:
current.resolve().relative_to(root)
except (OSError, ValueError):
raise ValueError(f"Shared infrastructure directory escapes project root: {label}") from None
def _ensure_safe_shared_destination(
project_path: Path,
dest: Path,
*,
parent_must_exist: bool = True,
) -> None:
"""Refuse shared infra writes that would escape or follow symlinks."""
root = project_path.resolve()
_shared_relative_path(project_path, dest)
if parent_must_exist:
_ensure_safe_shared_directory(project_path, dest.parent, create=False)
else:
_validate_safe_shared_directory(project_path, dest.parent)
label = _shared_destination_label(project_path, dest)
if dest.is_symlink():
raise SymlinkedSharedPathError(f"Refusing to overwrite symlinked shared infrastructure path: {label}")
if dest.exists():
try:
dest.resolve().relative_to(root)
except (OSError, ValueError):
raise ValueError(f"Shared infrastructure destination escapes project root: {label}") from None
def _write_shared_text(project_path: Path, dest: Path, content: str) -> None:
_write_shared_bytes(project_path, dest, content.encode("utf-8"))
def _write_shared_bytes(
project_path: Path,
dest: Path,
content: bytes,
*,
mode: int = 0o644,
) -> None:
_ensure_safe_shared_destination(project_path, dest)
fd, temp_name = tempfile.mkstemp(prefix=f".{dest.name}.", dir=dest.parent)
temp_path = Path(temp_name)
try:
with os.fdopen(fd, "wb") as fh:
fh.write(content)
temp_path.chmod(mode)
_ensure_safe_shared_destination(project_path, dest)
os.replace(temp_path, dest)
finally:
temp_path.unlink(missing_ok=True)
_BASH_FORMAT_COMMAND_RE = re.compile(
r"\$\(\s*format_speckit_command\s+(['\"]?)([A-Za-z0-9_.-]+)\1(?:\s+[^)]*)?\)"
)
_POWERSHELL_FORMAT_COMMAND_RE = re.compile(
r"Format-SpecKitCommand\s+-CommandName\s+(['\"])([A-Za-z0-9_.-]+)\1(?:\s+-RepoRoot\s+[^\r\n]+)?"
)
_PYTHON_FORMAT_COMMAND_RETURN_RE = re.compile(
r'return f"/speckit\{separator\}\{name\}"'
)
_BASH_FORMATTER_RETURN_RE = re.compile(
r'''printf '/speckit%s%s\\n' "\$separator" "\$command_name"'''
)
_POWERSHELL_FORMATTER_RETURN_RE = re.compile(
r'return "/speckit\$separator\$name"'
)
def _format_speckit_command(
command_name: str, separator: str, prefix: str = "/"
) -> str:
name = command_name.strip().lstrip("/")
if name.startswith("speckit."):
name = name[len("speckit.") :]
elif name.startswith("speckit-"):
name = name[len("speckit-") :]
name = name.replace(".", separator)
return f"{prefix}speckit{separator}{name}"
def _resolve_dynamic_command_refs(
content: str, separator: str, prefix: str = "/"
) -> str:
"""Render script runtime command helpers for managed shared infra copies."""
bash_prefix = r"\$" if prefix == "$" else prefix
content = _BASH_FORMAT_COMMAND_RE.sub(
lambda match: _format_speckit_command(
match.group(2), separator, bash_prefix
),
content,
)
content = _POWERSHELL_FORMAT_COMMAND_RE.sub(
lambda match: f"'{_format_speckit_command(match.group(2), separator, prefix)}'",
content,
)
content = _BASH_FORMATTER_RETURN_RE.sub(
f'''printf '{prefix}speckit%s%s\\\\n' "$separator" "$command_name"''',
content,
)
powershell_prefix = "`$" if prefix == "$" else prefix
content = _POWERSHELL_FORMATTER_RETURN_RE.sub(
f'return "{powershell_prefix}speckit$separator$name"',
content,
)
return _PYTHON_FORMAT_COMMAND_RETURN_RE.sub(
f'return f"{prefix}speckit{{separator}}{{name}}"',
content,
)
def refresh_shared_templates(
project_path: Path,
*,
version: str,
core_pack: Path | None,
repo_root: Path,
console: Any,
invoke_separator: str,
invoke_prefix: str = "/",
force: bool = False,
) -> None:
"""Refresh default-sensitive shared templates without touching scripts."""
templates_src = shared_templates_source(core_pack=core_pack, repo_root=repo_root)
if not templates_src.is_dir():
return
manifest = load_speckit_manifest(project_path, version=version, console=console)
tracked_files = manifest.files
modified = set(manifest.check_modified())
skipped_files: list[str] = []
planned_updates: list[tuple[Path, str, str]] = []
dest_templates = project_path / ".specify" / "templates"
_ensure_safe_shared_directory(project_path, dest_templates)
for src in templates_src.iterdir():
if not src.is_file() or src.name == "vscode-settings.json" or src.name.startswith("."):
continue
dst = dest_templates / src.name
_ensure_safe_shared_destination(project_path, dst)
rel = dst.relative_to(project_path).as_posix()
if dst.exists() and not force:
if rel not in tracked_files or rel in modified or manifest.is_recovered(rel):
# Never overwrite a recovered (pre-existing user) file without
# --force, matching install_shared_infra's is_recovered gate
# (#2918). Without this, refresh clobbers user content.
skipped_files.append(rel)
continue
content = src.read_text(encoding="utf-8")
content = IntegrationBase.resolve_command_refs(
content, invoke_separator, invoke_prefix
)
planned_updates.append((dst, rel, content))
for dst, rel, content in planned_updates:
_write_shared_text(project_path, dst, content)
manifest.record_existing(rel)
manifest.save()
if skipped_files:
console.print(
f"[yellow]⚠[/yellow] {len(skipped_files)} modified, untracked, or preserved (recovered) shared template file(s) were not updated:"
)
for rel in skipped_files:
console.print(f" {rel}")
def install_shared_infra(
project_path: Path,
script_type: str,
*,
version: str,
core_pack: Path | None,
repo_root: Path,
console: Any,
force: bool = False,
invoke_separator: str = ".",
invoke_prefix: str = "/",
refresh_managed: bool = False,
refresh_hint: str | None = None,
) -> bool:
"""Install shared scripts and templates into *project_path*.
When ``refresh_managed`` is True, files whose on-disk hash still matches
the previously recorded manifest hash are overwritten with the bundled
version. Files whose hash diverges are treated as user customizations and
preserved with a warning. ``force=True`` overwrites every regular file
(symlinks and symlinked-parent destinations are always preserved with a
warning — the safe-destination check refuses to follow them so writes
cannot escape the project root). ``refresh_hint`` is shown after the
customization warning to tell the user which flag would overwrite their
customizations.
"""
from .integrations.manifest import _sha256, _validate_rel_path
manifest = load_speckit_manifest(project_path, version=version, console=console)
prior_hashes = dict(manifest.files)
def _is_managed(rel: str, dst: Path) -> bool:
expected = prior_hashes.get(rel)
if not expected or not dst.is_file() or dst.is_symlink():
return False
if manifest.is_recovered(rel):
return False
try:
return _sha256(dst) == expected
except OSError:
return False
skipped_files: list[str] = []
preserved_user_files: list[str] = []
symlinked_files: list[str] = []
planned_copies: list[tuple[Path, str, bytes, int]] = []
planned_templates: list[tuple[Path, str, str]] = []
# Track every shared path the current bundle produces so we can detect
# manifest entries the core no longer ships (stale-script cleanup, #3076).
seen_rels: set[str] = set()
scanned_variant_dirs: set[str] = set()
shell_variant = "powershell" if os.name == "nt" else "bash"
variant_dirs = (
("python", shell_variant)
if script_type == "py"
else ("bash" if script_type == "sh" else "powershell",)
)
def _decide_overwrite(rel: str, dst: Path) -> tuple[bool, str | None]:
"""Return (write, bucket) where bucket is 'skip', 'preserved', or None."""
if not dst.exists():
return True, None
if force:
return True, None
if refresh_managed:
if _is_managed(rel, dst):
return True, None
if rel in prior_hashes:
return False, "preserved"
return False, "skip"
return False, "skip"
def _safe_dest_or_bucket(dst: Path, rel: str, *, parent_must_exist: bool = True) -> bool:
"""Run the safe-destination check and bucket symlinked paths.
Returns True when the destination is safe to consider (write or skip).
Returns False (and records *rel* under ``symlinked_files``) when the
destination or any of its ancestors is a symlink — those paths can't
be written to safely, but they shouldn't abort the whole switch
either. They're surfaced as a separate "symlinked" warning bucket.
Other unsafe-path errors (e.g. path escape, parent-not-a-directory)
are NOT caught here: they re-raise so the operation aborts, since
treating them as "symlinked" would mask security-relevant failures.
"""
try:
_ensure_safe_shared_destination(project_path, dst, parent_must_exist=parent_must_exist)
except SymlinkedSharedPathError:
symlinked_files.append(rel)
return False
return True
def _ensure_or_bucket_dir(directory: Path) -> bool:
"""Create *directory* unless an ancestor is symlinked.
Returns True when the directory is safe to use. Returns False (and
records the path under ``symlinked_files``) when a symlink ancestor
forces us to skip the whole subtree. Other unsafe-path errors
(escape, not-a-directory) re-raise so the operation aborts.
"""
try:
_ensure_safe_shared_directory(project_path, directory)
except SymlinkedSharedPathError:
symlinked_files.append(directory.relative_to(project_path).as_posix())
return False
return True
scripts_src = shared_scripts_source(core_pack=core_pack, repo_root=repo_root)
if scripts_src.is_dir():
dest_scripts = project_path / ".specify" / "scripts"
if _ensure_or_bucket_dir(dest_scripts):
for variant_dir in variant_dirs:
variant_src = scripts_src / variant_dir
if not variant_src.is_dir():
continue
dest_variant = dest_scripts / variant_dir
if not _ensure_or_bucket_dir(dest_variant):
continue
for src_path in variant_src.rglob("*"):
if not src_path.is_file():
continue
# Python bytecode caches are local artifacts, not
# workflow scripts — never install them.
if "__pycache__" in src_path.parts:
continue
# Mark scanned only once a real source file is seen. An
# empty (or symlink-skipped) variant stays untracked, so
# stale-cleanup cannot treat its managed scripts as obsolete.
scanned_variant_dirs.add(variant_dir)
rel_path = src_path.relative_to(variant_src)
dst_path = dest_variant / rel_path
rel = dst_path.relative_to(project_path).as_posix()
seen_rels.add(rel)
if not _safe_dest_or_bucket(dst_path, rel, parent_must_exist=False):
continue
write, bucket = _decide_overwrite(rel, dst_path)
if not write:
if bucket == "preserved":
preserved_user_files.append(rel)
else:
skipped_files.append(rel)
# Record the existing-on-disk file in the manifest so a
# fresh manifest run against an already-populated
# ``.specify/`` tree does not silently drop it (#2107).
# ``prior_hashes`` is the function-scope snapshot taken
# at entry, so this membership check is O(1) and avoids
# the repeated ``dict(self._files)`` copy that
# ``manifest.files`` performs on every access.
if dst_path.is_file() and rel not in prior_hashes:
try:
manifest.record_existing(rel, recovered=True)
except (OSError, ValueError) as exc:
# Tolerate races / permission issues / non-file
# collisions so one weird path does not abort
# the whole install.
console.print(
f"[yellow]⚠[/yellow] could not record {rel} in manifest: {exc}"
)
continue
if not _ensure_or_bucket_dir(dst_path.parent):
continue
content = src_path.read_text(encoding="utf-8")
content = IntegrationBase.resolve_command_refs(
content, invoke_separator, invoke_prefix
)
content = _resolve_dynamic_command_refs(
content, invoke_separator, invoke_prefix
)
planned_copies.append(
(
dst_path,
rel,
content.encode("utf-8"),
src_path.stat().st_mode & 0o777,
)
)
templates_src = shared_templates_source(core_pack=core_pack, repo_root=repo_root)
if templates_src.is_dir():
dest_templates = project_path / ".specify" / "templates"
if _ensure_or_bucket_dir(dest_templates):
for src in templates_src.iterdir():
if not src.is_file() or src.name == "vscode-settings.json" or src.name.startswith("."):
continue
dst = dest_templates / src.name
rel = dst.relative_to(project_path).as_posix()
seen_rels.add(rel)
if not _safe_dest_or_bucket(dst, rel):
continue
write, bucket = _decide_overwrite(rel, dst)
if not write:
if bucket == "preserved":
preserved_user_files.append(rel)
else:
skipped_files.append(rel)
# Record the existing-on-disk template in the manifest so a
# fresh manifest run against an already-populated
# ``.specify/`` tree does not silently drop it (#2107).
# ``prior_hashes`` is the function-scope snapshot taken at
# entry, so this membership check is O(1) and avoids the
# repeated ``dict(self._files)`` copy that ``manifest.files``
# performs on every access.
if dst.is_file() and rel not in prior_hashes:
try:
manifest.record_existing(rel, recovered=True)
except (OSError, ValueError) as exc:
# Tolerate races / permission issues / non-file
# collisions so one weird path does not abort
# the whole install.
console.print(
f"[yellow]⚠[/yellow] could not record {rel} in manifest: {exc}"
)
continue
content = src.read_text(encoding="utf-8")
content = IntegrationBase.resolve_command_refs(
content, invoke_separator, invoke_prefix
)
planned_templates.append((dst, rel, content))
# Managed ``.specify/.gitignore`` — keeps machine-local state (the
# ``feature.json`` pointer and per-machine ``local-config.yml`` overrides)
# out of git while leaving everything else shareable. Routed through the
# same overwrite/skip/preserve policy as templates so ``--force`` refreshes
# it and user edits are preserved. Like every other shared-infra file it is
# tracked in ``speckit.manifest.json`` (not the per-integration manifest) and
# is therefore intentionally left in place by ``integration uninstall``.
specify_dir = project_path / ".specify"
if _ensure_or_bucket_dir(specify_dir):
gitignore_dst = specify_dir / ".gitignore"
gitignore_rel = gitignore_dst.relative_to(project_path).as_posix()
seen_rels.add(gitignore_rel)
if _safe_dest_or_bucket(gitignore_dst, gitignore_rel):
write, bucket = _decide_overwrite(gitignore_rel, gitignore_dst)
if write:
planned_templates.append(
(gitignore_dst, gitignore_rel, SPECIFY_GITIGNORE_CONTENT)
)
elif bucket == "preserved":
preserved_user_files.append(gitignore_rel)
else:
skipped_files.append(gitignore_rel)
if gitignore_dst.is_file() and gitignore_rel not in prior_hashes:
try:
manifest.record_existing(gitignore_rel, recovered=True)
except (OSError, ValueError) as exc:
console.print(
f"[yellow]⚠[/yellow] could not record {gitignore_rel} in manifest: {exc}"
)
for dst_path, rel, content, mode in planned_copies:
if not _ensure_or_bucket_dir(dst_path.parent):
continue
_write_shared_bytes(project_path, dst_path, content, mode=mode)
manifest.record_existing(rel)
for dst, rel, content in planned_templates:
_write_shared_text(project_path, dst, content)
manifest.record_existing(rel)
if skipped_files:
console.print(
f"[yellow]⚠[/yellow] {len(skipped_files)} shared infrastructure path(s) already exist and were not updated:"
)
for path in skipped_files:
console.print(f" {path}")
if refresh_managed and refresh_hint:
console.print(refresh_hint)
else:
console.print(
"To refresh shared infrastructure, run "
"[cyan]specify init --here --force[/cyan] or "
"[cyan]specify integration upgrade --force[/cyan]."
)
if symlinked_files:
console.print(
f"[yellow]⚠[/yellow] Skipped {len(symlinked_files)} symlinked shared "
"infrastructure path(s) — symlinks are never overwritten because they "
"may resolve outside the project root:"
)
for path in symlinked_files:
console.print(f" {path}")
console.print(
"To restore the bundled version, remove or replace the symlink manually, "
"then re-run the command."
)
if preserved_user_files:
console.print(
f"[yellow]⚠[/yellow] Preserved {len(preserved_user_files)} customized shared "
"infrastructure file(s) (hash differs from previous install):"
)
for path in preserved_user_files:
console.print(f" {path}")
if refresh_hint:
console.print(refresh_hint)
# Remove stale managed scripts: paths a previous install recorded that the
# current core no longer ships — e.g. the legacy
# ``scripts/<variant>/update-agent-context.sh`` superseded by the bundled
# agent-context extension. Left behind, such an orphan can crash when it
# sources a refreshed ``common.sh`` (#3076). Only run when the script source
# was actually scanned (so a missing/empty source never triggers mass
# deletion), scoped to the selected variants, and only for *managed* copies —
# a user-customized file (hash diverges), a symlink, or a recovered entry is
# preserved by ``_is_managed``.
if scanned_variant_dirs:
stale_removed: list[str] = []
script_prefixes = tuple(
f".specify/scripts/{variant_dir}/" for variant_dir in scanned_variant_dirs
)
for rel in list(prior_hashes):
if rel in seen_rels or not rel.startswith(script_prefixes):
continue
# Guard corrupted/hand-edited manifest keys BEFORE any filesystem
# access: absolute, ``..``, or (on Windows) drive-relative keys such
# as ``C:tmp`` are not ``is_absolute()`` yet discard the project root
# when joined. The lexical check is a fast reject; ``_validate_rel_path``
# resolves the join and confirms containment, catching the rest. A key
# that still escapes is *skipped*, never turned into an install-time
# hard failure. Mirrors IntegrationManifest.is_recovered / remove.
rel_path = Path(rel)
if rel_path.is_absolute() or ".." in rel_path.parts:
continue
try:
_validate_rel_path(rel_path, project_path)
except ValueError:
continue
dst = project_path / rel_path
# Already gone from disk but still tracked: drop the orphaned manifest
# entry so the manifest stays consistent (nothing to unlink).
if not dst.exists() and not dst.is_symlink():
manifest.remove(rel)
continue
if not _is_managed(rel, dst):
continue # user-modified / symlink / recovered → preserve
# Never unlink through a symlinked ancestor (writes/deletes could
# escape the project root). The safe-destination check buckets such
# paths under ``symlinked_files`` and we leave them in place.
if not _safe_dest_or_bucket(dst, rel):
continue
try:
dst.unlink()
except OSError as exc:
console.print(f"[yellow]⚠[/yellow] could not remove stale {rel}: {exc}")
continue
manifest.remove(rel)
stale_removed.append(rel)
if stale_removed:
console.print(
f"[yellow]⚠[/yellow] Removed {len(stale_removed)} obsolete shared "
"script(s) left by a previous install:"
)
for path in stale_removed:
console.print(f" {path}")
manifest.save()
return True