* fix: preserve .vscode/settings.json and script +x bit on integration upgrade
During 'specify integration upgrade', Phase 2 stale-cleanup removes files
present in the old manifest but absent from the new one. Copilot's setup()
merges into an existing .vscode/settings.json and stops tracking it, so the
file was being deleted on upgrade (destroying user settings). Add a
stale_cleanup_exclusions() hook that integrations use to protect such
conditionally-tracked merge targets. Also restore the executable bit on
shared .sh scripts after the managed-refresh step on POSIX.
Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>
* fix: address review on stale-cleanup fix
- Normalize stale_cleanup_exclusions() to POSIX before subtracting from
manifest keys, so exclusions built with os.path.join / backslashes still
match on Windows.
- Strengthen test_upgrade_preserves_existing_vscode_settings to add a
user-defined key and assert it survives the upgrade (via --force, exercising
the merge + stale-cleanup path) instead of the brittle after == before check.
Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>
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Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>
* refactor(integrations): co-locate integration commands in integrations/ domain dir
- Remove commands/ stubs (handlers will live in domain dirs)
- Move all integration CLI handlers out of __init__.py into integrations/
- Split into focused modules under integrations/:
_helpers.py (340 lines) — domain helpers
_install_commands.py (306 lines) — install / uninstall
_migrate_commands.py (487 lines) — switch / upgrade
_query_commands.py (442 lines) — list / use / search / info / catalog
_commands.py (34 lines) — app objects + register()
- __init__.py reduced by ~1400 lines; integration block replaced with register() call
- Fix patch paths in tests to new module locations
* fix(integrations): restore original integration list output in refactor
Preserve the CLI Required column, post-table default/installed summary,
and no-installed guidance that were dropped during the no-behavior-change
refactor of integration list into _query_commands.py.
* Potential fix for pull request finding
Co-authored-by: Copilot Autofix powered by AI <175728472+Copilot@users.noreply.github.com>
* fix(integrations): restore _clear/_update_init_options public imports
The refactor that split integration commands moved
_clear_init_options_for_integration and _update_init_options_for_integration
into integrations/_helpers.py, but tests still import them from the top-level
specify_cli package, causing ImportError. Re-export them with explicit aliases
at the end of __init__.py to preserve the public import surface.
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Co-authored-by: Copilot Autofix powered by AI <175728472+Copilot@users.noreply.github.com>
