Integrate Junie with dot-to-hyphen behavior and command formatting (#4073)

* Add Junie integration with dot-to-hyphen behavior, command formatting, and file transformations. Based on Cline Integration.

* Fix references to Cline in Junie integration and update class/test names for consistency.

* Fix references to Cline in Junie integration and update class/test names for consistency.

* Modified to generate correct formatting in junie

src/specify_cli/extensions/__init__.py

@@ -4712,6 +4712,7 @@ class HookExecutor:
         kimi_skill_mode = selected_ai == "kimi"
         cline_mode = selected_ai == "cline"
         forge_mode = selected_ai == "forge"
+        junie_mode = selected_ai == "junie"
 
         skill_name = self._skill_name_from_command(command_id)
         if dollar_skill_mode and skill_name:
@@ -4726,6 +4727,10 @@ class HookExecutor:
             from ..integrations.forge import format_forge_command_name
 
             return f"/{format_forge_command_name(command_id)}"
+        if junie_mode:
+            from ..integrations.junie import format_junie_command_name
+
+            return f"/{format_junie_command_name(command_id)}"
 
         use_slash = is_slash_skills_agent(selected_ai, ai_skills_enabled)
 

src/specify_cli/integrations/junie/__init__.py

@@ -1,6 +1,51 @@
 """Junie integration (JetBrains)."""
 
 from ..base import MarkdownIntegration
+from ..manifest import IntegrationManifest
+
+
+import re
+from pathlib import Path
+from typing import Any
+
+# Note injected into hook sections so Junie maps dot-notation command
+# names (from extensions.yml) to the hyphenated slash commands it uses.
+_HOOK_COMMAND_NOTE = (
+    "- When constructing slash commands from hook command names, "
+    "replace dots (`.`) with hyphens (`-`). "
+    "For example, `speckit.git.commit` → `/speckit-git-commit`.\n"
+)
+
+
+def format_junie_command_name(cmd_name: str) -> str:
+    """Convert command name to Junie-compatible hyphenated format.
+
+    Junie does not allow dots inside of slash-commands.
+    This function converts dot-notation command names to hyphenated format.
+
+    The function is idempotent: already-formatted names are returned unchanged.
+
+    Examples:
+        >>> format_junie_command_name("plan")
+        'speckit-plan'
+        >>> format_junie_command_name("speckit.plan")
+        'speckit-plan'
+        >>> format_junie_command_name("speckit.git.commit")
+        'speckit-git-commit'
+
+    Args:
+        cmd_name: Command name in dot notation (speckit.foo.bar),
+                  hyphenated format (speckit-foo-bar), or plain name (foo)
+
+    Returns:
+        Hyphenated command name with 'speckit-' prefix
+    """
+    cmd_name = cmd_name.replace(".", "-")
+
+    if not cmd_name.startswith("speckit-"):
+        cmd_name = f"speckit-{cmd_name}"
+
+    return cmd_name
 
 
 class JunieIntegration(MarkdownIntegration):
@@ -17,5 +62,117 @@ class JunieIntegration(MarkdownIntegration):
         "format": "markdown",
         "args": "$ARGUMENTS",
         "extension": ".md",
+        "inject_name": True,
+        "format_name": format_junie_command_name,
+        "invoke_separator": "-",
     }
     multi_install_safe = True
+    invoke_separator = "-"
+
+    def command_filename(self, template_name: str) -> str:
+        return format_junie_command_name(template_name) + ".md"
+
+    def build_command_invocation(self, command_name: str, args: str = "") -> str:
+        """Junie installs hyphenated slash-commands (``/speckit-<name>``), so the
+        dispatch invocation must match. The inherited MarkdownIntegration default
+        builds the dotted ``/speckit.<name>``, which references a command Junie
+        never registered. Reuse the same hyphenation as command_filename /
+        the injected frontmatter name (see ``format_junie_command_name``),
+        mirroring the forge integration.
+        """
+        invocation = "/" + format_junie_command_name(command_name)
+        if args:
+            invocation = f"{invocation} {args}"
+        return invocation
+
+    def process_template(self, *args, **kwargs):
+        """Ensure shared templates render Junie command references with hyphens."""
+        kwargs.setdefault("invoke_separator", self.invoke_separator)
+        return super().process_template(*args, **kwargs)
+
+    @staticmethod
+    def _inject_hook_command_note(content: str) -> str:
+        """Insert a dot-to-hyphen note before each hook output instruction.
+
+        Targets the line ``- For each executable hook, output the following``
+        and inserts the note on the line before it, matching its indentation.
+        Skips if the note is already present.
+        """
+        if "replace dots" in content:
+            return content
+
+        def repl(m: re.Match[str]) -> str:
+            indent = m.group(1)
+            instruction = m.group(2)
+            # ``eol`` is empty when the regex matched via ``$`` because the
+            # instruction was the final line of a file with no trailing
+            # newline. Default to ``\n`` so the note never collapses onto
+            # the same line as the instruction.
+            eol = m.group(3) or "\n"
+            return (
+                indent
+                + _HOOK_COMMAND_NOTE.rstrip("\n")
+                + eol
+                + indent
+                + instruction
+                + eol
+            )
+
+        return re.sub(
+            r"(?m)^(\s*)(- For each executable hook, output the following[^\r\n]*)(\r\n|\n|$)",
+            repl,
+            content,
+        )
+
+    @staticmethod
+    def _rewrite_handoff_references(content: str) -> str:
+        """Replace dot-notation agent references in handoffs with hyphens."""
+        return re.sub(
+            r"(?m)^(\s*agent:\s*)(speckit\.[A-Za-z0-9-_]+(?:\.[A-Za-z0-9-_]+)*)",
+            lambda m: f"{m.group(1)}{format_junie_command_name(m.group(2))}",
+            content,
+        )
+    def post_process_command_content(self, content: str) -> str:
+        """Apply Junie-specific transformations to command content.
+
+        Overrides the ``IntegrationBase`` hook of the same name so that
+        ``CommandRegistrar.register_commands()`` (which dispatches to
+        ``post_process_command_content``) applies these transforms to
+        extension/preset command files too, not just core commands.
+        """
+        updated = self._inject_hook_command_note(content)
+        updated = self._rewrite_handoff_references(updated)
+        return updated
+
+    def setup(
+        self,
+        project_root: Path,
+        manifest: IntegrationManifest,
+        parsed_options: dict[str, Any] | None = None,
+        **opts: Any,
+    ) -> list[Path]:
+        """Install Junie commands and apply post-processing transformations."""
+        created = super().setup(project_root, manifest, parsed_options, **opts)
+
+        # Post-process generated command files
+        dest_dir = self.commands_dest(project_root).resolve()
+
+        for path in created:
+            # Only touch .md files under the commands directory
+            try:
+                path.resolve().relative_to(dest_dir)
+            except ValueError:
+                continue
+            if path.suffix != ".md":
+                continue
+
+            content_bytes = path.read_bytes()
+            content = content_bytes.decode("utf-8")
+
+            updated = self.post_process_command_content(content)
+
+            if updated != content:
+                path.write_bytes(updated.encode("utf-8"))
+                self.record_file_in_manifest(path, project_root, manifest)
+
+        return created