feat: solve command visibility

tests/test_commands.py

@@ -113,7 +113,7 @@ def test_commands_ledger_pipe(project):
 
 def test_register_framework_prompts_setup():
     mcp = FastMCP("t")
-    assert commands.register_framework_prompts(mcp) == 1
+    assert commands.register_framework_prompts(mcp) == 2
 
     async def go():
         async with Client(mcp) as c:

tests/test_server.py

@@ -338,7 +338,8 @@ def test_state_files_are_resources(project):
             return listed, file[0].text, folder[0].text, archived[0].text, blocked[0].text
 
     listed, file_text, folder_text, archived_text, blocked_text = asyncio.run(go())
-    assert "gcontext://modules/m/index.md" in listed
+    assert any(u.startswith("agent://") and u.endswith("/modules/m") for u in listed)
+    assert any(u.startswith("agent://") and "modules" not in u and "connections" not in u for u in listed)
     assert not any("secrets.env" in u for u in listed)
     assert not any(u.startswith("gcontext://archive/") for u in listed)
     assert file_text == "topic notes"