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The ignore file is exempt from filtering in Filter.Skip: it syncs even on --shared mounts (where it sat outside the include list and was local-only) and even when one of its own patterns matches it. One guard covers both scan and materialize since they share the filter. Docs updated on all three surfaces (SKILL.md, install.md, web/docs). Claude-Session: https://claude.ai/code/session_01G3AdFdps7seYbW6FhyK58t Co-authored-by: Claude Fable 5 <noreply@anthropic.com>