feat: Add Deep Research System v4.2.0 - Autonomous web research capabilities
## Overview
Comprehensive implementation of Deep Research framework aligned with DR Agent architecture, enabling autonomous, adaptive, and intelligent web research capabilities.
## Key Features
### 🔬 Deep Research Agent
- 15th specialized agent for comprehensive research orchestration
- Adaptive planning strategies: Planning-Only, Intent-Planning, Unified Intent-Planning
- Multi-hop reasoning with genealogy tracking (up to 5 hops)
- Self-reflective mechanisms with confidence scoring (0.0-1.0)
- Case-based learning for cross-session intelligence
### 🎯 New /sc:research Command
- Intelligent web research with depth control (quick/standard/deep/exhaustive)
- Parallel-first execution for optimal performance
- Domain filtering and time-based search options
- Automatic report generation in claudedocs/
### 🔍 Tavily MCP Integration
- 7th MCP server for real-time web search
- News search with time filtering
- Content extraction from search results
- Multi-round searching with iterative refinement
- Free tier available with optional API key
### 🎨 MODE_DeepResearch
- 7th behavioral mode for systematic investigation
- 6-phase workflow: Understand → Plan → TodoWrite → Execute → Track → Validate
- Evidence-based reasoning with citation management
- Parallel operation defaults for efficiency
## Technical Changes
### Framework Updates
- Updated agent count: 14 → 15 agents
- Updated mode count: 6 → 7 modes
- Updated MCP server count: 6 → 7 servers
- Updated command count: 24 → 25 commands
### Configuration
- Added RESEARCH_CONFIG.md for research settings
- Added deep_research_workflows.md with examples
- Standardized file naming conventions (UPPERCASE for Core)
- Removed multi-source investigation features for simplification
### Integration Points
- Enhanced MCP component with remote server support
- Added check_research_prerequisites() in environment.py
- Created verify_research_integration.sh script
- Updated all documentation guides
## Requirements
- TAVILY_API_KEY environment variable (free tier available)
- Node.js and npm for Tavily MCP execution
## Documentation
- Complete user guide integration
- Workflow examples and best practices
- API configuration instructions
- Depth level explanations
🤖 Generated with Claude Code
Co-authored-by: moshe_anconina <moshe_a@ituran.com>
Co-authored-by: Claude <noreply@anthropic.com>
- Fix version consistency (PyPI: 4.0.0, NPM: 4.0.3)
- Update license format to PEP 639 compliance
- Restore NPM package components (bin/ and package.json)
- Fix NPM package name to @superclaude-org/superclaude
- Add comprehensive RELEASE_INSTRUCTIONS.md
- Update .gitignore to include NPM files
- Ready for production release on both PyPI and NPM
Co-Authored-By: Claude <noreply@anthropic.com>
- Fix directory structure in technical-architecture.md to match actual ~/.claude/ structure
- Correct session management documentation to show true persistent memory via Serena MCP
- Add comprehensive flags documentation with 40+ missing command-specific flags
- Remove verification status sections across all documentation
- Fix component counts: 14 agents, 5 modes, 21 commands
- Update gitignore to exclude CRUSH.md and TODO.txt personal files
- Standardize documentation structure and remove fictional content
🤖 Generated with [Claude Code](https://claude.ai/code)
Co-Authored-By: Claude <noreply@anthropic.com>
- Standardize documentation structure across all sections
- Fix CLI confusion and streamline user guidance
- Remove fictional content and align with actual functionality
- Improve technical architecture documentation
- Update installation and quick-start guides
- Enhance reference materials and examples
🤖 Generated with [Claude Code](https://claude.ai/code)
Co-Authored-By: Claude <noreply@anthropic.com>
## Critical Framework Accuracy Fixes
### Remove Non-Existent Error Codes
- **Deleted E001-E008 error code table** from commands.md
- These error codes never existed in SuperClaude Framework
- SuperClaude is instruction-based, not code-based, so cannot generate error codes
### Fix Non-Existent Commands
- **Fixed `SuperClaude status --mcp`** references in commands.md
- This command doesn't exist - replaced with actual working commands
- Updated validation steps to use real installation verification
### Correct Error Handling Documentation
- **Reframed fictional error classes** in technical-architecture.md
- Replaced `ComponentInstallationError`, `AgentCoordinationError` with conceptual issues
- Clarified that SuperClaude operates through instruction files, not runtime exceptions
- Converted exception examples to conceptual issue categories
## Why This Matters
SuperClaude Framework enhances Claude Code through behavioral instruction files (.md files).
Since it doesn't execute code (except Python installation), it cannot generate runtime
errors or error codes. This fix ensures documentation accurately reflects the framework's
instruction-based nature.
## Files Updated
- `User-Guide/commands.md`: Removed error code table and fixed command references
- `Developer-Guide/technical-architecture.md`: Converted fictional error handling to conceptual issues
## Result
Documentation now accurately represents SuperClaude as a behavioral enhancement framework
rather than incorrectly presenting it as a traditional error-generating application.
🤖 Generated with [Claude Code](https://claude.ai/code)
Co-Authored-By: Claude <noreply@anthropic.com>
- Restructured all documentation under unified Docs/ directory
- Removed outdated phase summaries and consolidated content
- Added comprehensive Reference section with 11 new guides:
* Advanced patterns and workflows
* Basic examples and common issues
* Integration patterns and MCP server guides
* Optimization and diagnostic references
- Enhanced User-Guide with updated agent and mode documentation
- Updated MCP configurations for morphllm and serena
- Added TODO.md for project tracking
- Maintained existing content quality while improving organization
🤖 Generated with Claude Code
Co-Authored-By: Claude <noreply@anthropic.com>
