- Standardize documentation structure across all sections
- Fix CLI confusion and streamline user guidance
- Remove fictional content and align with actual functionality
- Improve technical architecture documentation
- Update installation and quick-start guides
- Enhance reference materials and examples
🤖 Generated with [Claude Code](https://claude.ai/code)
Co-Authored-By: Claude <noreply@anthropic.com>
• Updated troubleshooting.md, optimization-guide.md, mcp-server-guide.md, diagnostic-reference.md, and README.md
• Changed internal references from (filename.md) to (./filename.md) format
• Improved link robustness and portability across different viewing contexts
• Completed cross-reference standardization throughout Reference directory
🤖 Generated with [Claude Code](https://claude.ai/code)
Co-Authored-By: Claude <noreply@anthropic.com>
- Restructured all documentation under unified Docs/ directory
- Removed outdated phase summaries and consolidated content
- Added comprehensive Reference section with 11 new guides:
* Advanced patterns and workflows
* Basic examples and common issues
* Integration patterns and MCP server guides
* Optimization and diagnostic references
- Enhanced User-Guide with updated agent and mode documentation
- Updated MCP configurations for morphllm and serena
- Added TODO.md for project tracking
- Maintained existing content quality while improving organization
🤖 Generated with Claude Code
Co-Authored-By: Claude <noreply@anthropic.com>