feat: Add Deep Research System v4.2.0 - Autonomous web research capabilities
## Overview
Comprehensive implementation of Deep Research framework aligned with DR Agent architecture, enabling autonomous, adaptive, and intelligent web research capabilities.
## Key Features
### 🔬 Deep Research Agent
- 15th specialized agent for comprehensive research orchestration
- Adaptive planning strategies: Planning-Only, Intent-Planning, Unified Intent-Planning
- Multi-hop reasoning with genealogy tracking (up to 5 hops)
- Self-reflective mechanisms with confidence scoring (0.0-1.0)
- Case-based learning for cross-session intelligence
### 🎯 New /sc:research Command
- Intelligent web research with depth control (quick/standard/deep/exhaustive)
- Parallel-first execution for optimal performance
- Domain filtering and time-based search options
- Automatic report generation in claudedocs/
### 🔍 Tavily MCP Integration
- 7th MCP server for real-time web search
- News search with time filtering
- Content extraction from search results
- Multi-round searching with iterative refinement
- Free tier available with optional API key
### 🎨 MODE_DeepResearch
- 7th behavioral mode for systematic investigation
- 6-phase workflow: Understand → Plan → TodoWrite → Execute → Track → Validate
- Evidence-based reasoning with citation management
- Parallel operation defaults for efficiency
## Technical Changes
### Framework Updates
- Updated agent count: 14 → 15 agents
- Updated mode count: 6 → 7 modes
- Updated MCP server count: 6 → 7 servers
- Updated command count: 24 → 25 commands
### Configuration
- Added RESEARCH_CONFIG.md for research settings
- Added deep_research_workflows.md with examples
- Standardized file naming conventions (UPPERCASE for Core)
- Removed multi-source investigation features for simplification
### Integration Points
- Enhanced MCP component with remote server support
- Added check_research_prerequisites() in environment.py
- Created verify_research_integration.sh script
- Updated all documentation guides
## Requirements
- TAVILY_API_KEY environment variable (free tier available)
- Node.js and npm for Tavily MCP execution
## Documentation
- Complete user guide integration
- Workflow examples and best practices
- API configuration instructions
- Depth level explanations
🤖 Generated with Claude Code
Co-authored-by: moshe_anconina <moshe_a@ituran.com>
Co-authored-by: Claude <noreply@anthropic.com>
- Fix version consistency (PyPI: 4.0.0, NPM: 4.0.3)
- Update license format to PEP 639 compliance
- Restore NPM package components (bin/ and package.json)
- Fix NPM package name to @superclaude-org/superclaude
- Add comprehensive RELEASE_INSTRUCTIONS.md
- Update .gitignore to include NPM files
- Ready for production release on both PyPI and NPM
Co-Authored-By: Claude <noreply@anthropic.com>
- Fix directory structure in technical-architecture.md to match actual ~/.claude/ structure
- Correct session management documentation to show true persistent memory via Serena MCP
- Add comprehensive flags documentation with 40+ missing command-specific flags
- Remove verification status sections across all documentation
- Fix component counts: 14 agents, 5 modes, 21 commands
- Update gitignore to exclude CRUSH.md and TODO.txt personal files
- Standardize documentation structure and remove fictional content
🤖 Generated with [Claude Code](https://claude.ai/code)
Co-Authored-By: Claude <noreply@anthropic.com>
- Standardize documentation structure across all sections
- Fix CLI confusion and streamline user guidance
- Remove fictional content and align with actual functionality
- Improve technical architecture documentation
- Update installation and quick-start guides
- Enhance reference materials and examples
🤖 Generated with [Claude Code](https://claude.ai/code)
Co-Authored-By: Claude <noreply@anthropic.com>
## Command Syntax Standardization
- Fix lowercase "superclaude" → "SuperClaude" in installation.md
- Distinguish between terminal commands (SuperClaude install) and Claude Code commands (/sc:*)
- Add clear command context headers to all major documentation files
## Documentation Improvements
- Add command reference tables to key guides
- Create visual distinction markers (🖥️ Terminal vs 💬 Claude Code)
- Update verification sections with proper command separation
- Fix content duplications in Developer-Guide and Getting-Started files
## Cross-Reference Updates
- Standardize all documentation links to use Docs/ prefix structure
- Replace invalid email addresses with anton.knoery@gmail.com
- Remove non-existent team references from security documentation
## Files Enhanced
- Getting-Started: installation.md, quick-start.md with command clarity
- User-Guide: commands.md with comprehensive command context
- Reference: troubleshooting.md, common-issues.md with mixed command support
- Root files: README.md, CONTRIBUTING.md, SECURITY.md link updates
This resolves command confusion between installation (terminal) and development (/sc:) commands.
🤖 Generated with Claude Code
Co-Authored-By: Claude <noreply@anthropic.com>
- Restructured all documentation under unified Docs/ directory
- Removed outdated phase summaries and consolidated content
- Added comprehensive Reference section with 11 new guides:
* Advanced patterns and workflows
* Basic examples and common issues
* Integration patterns and MCP server guides
* Optimization and diagnostic references
- Enhanced User-Guide with updated agent and mode documentation
- Updated MCP configurations for morphllm and serena
- Added TODO.md for project tracking
- Maintained existing content quality while improving organization
🤖 Generated with Claude Code
Co-Authored-By: Claude <noreply@anthropic.com>
