Clean up references to deleted scripts and pattern system

- Removed references to validate-references.sh from YAML files
- Removed expand-references.sh from settings.local.json
- Cleaned up @pattern/@flags references from shared files
- Updated documentation to reflect current no-code implementation
- Simplified reference-index.yml to remove @include patterns

This cleanup removes confusion from the abandoned pattern reference
system while maintaining all functionality.

🤖 Generated with [Claude Code](https://claude.ai/code)

Co-Authored-By: Claude <noreply@anthropic.com>

.claude/commands/git.md

@@ -1,47 +1,260 @@
+# /git - Manage git workflows and repository operations
+
 ## Legend
 | Symbol | Meaning | | Abbrev | Meaning |
 |--------|---------|---|--------|---------|
-| → | leads to | | repo | repository |
-| & | and/with | | sync | synchronize |
-| w/ | with | | chkpt | checkpoint |
+| → | leads to | | cfg | configuration |
+| & | and/with | | impl | implementation |
+| w/ | with | | perf | performance |
+| @ | at/located | | ops | operations |
+| > | greater than | | val | validation |
+| ∀ | for all/every | | req | requirements |
+| ∃ | exists/there is | | deps | dependencies |
+| ∴ | therefore | | env | environment |
+| ∵ | because | | db | database |
+| ≡ | equivalent | | api | interface |
+| ≈ | approximately | | docs | documentation |
+| 📁 | directory/path | | std | standard |
+| 🔢 | number/count | | def | default |
+| 📝 | text/string | | ctx | context |
+| ⚙ | setting/config | | err | error |
+| 🎛 | control/flags | | exec | execution |
+| 🔧 | configuration | | qual | quality |
+| 📋 | group/category | | rec | recovery |
+| 🚨 | critical/urgent | | sev | severity |
+| ⚠ | warning/caution | | resp | response |
+| 🔄 | retry/recovery | | esc | escalation |
+| ✅ | success/fixed | | tok | token |
+| ❌ | failure/error | | opt | optimization |
+| ℹ | information | | UX | user experience |
+| ⚡ | fast/quick | | UI | user interface |
+| 🐌 | slow/delayed | | C | critical |
+| ✨ | complete/done | | H | high |
+| 📖 | read operation | | M | medium |
+| ✏ | edit operation | | L | low |
+| 🗑 | delete operation | | |
 
-@include shared/command-templates.yml#Command_Header
+## Purpose
+Manage comprehensive git workflows for repositories specified in $ARGUMENTS with safety checks and automation.
 
-Manage git workflows for repo in $ARGUMENTS.
+## Syntax
+`/git [flags] [operation/message]`
 
-@see shared/thinking-modes.yml ∀ thinking flags
+## Universal Flags
+--plan: "Show execution plan before running"
+--uc: "UltraCompressed mode (~70% token reduction)"
+--ultracompressed: "Alias for --uc"
+--think: "Multi-file analysis w/ context (4K tokens)"
+--think-hard: "Deep architectural analysis (10K tokens)"
+--ultrathink: "Critical system redesign (32K tokens)"
+--c7: "Enable Context7→library documentation lookup"
+--seq: "Enable Sequential→complex analysis & thinking"
+--magic: "Enable Magic→UI component generation"
+--pup: "Enable Puppeteer→browser automation & testing"
+--all-mcp: "Enable all MCP servers"
+--no-mcp: "Disable all MCP servers (native tools only)"
+--no-c7: "Disable Context7 specifically"
+--no-seq: "Disable Sequential thinking specifically"
+--no-magic: "Disable Magic UI builder specifically"
+--no-pup: "Disable Puppeteer specifically"
+## Execution Control
+--watch: "Continuous monitoring w/ real-time feedback"
+--interactive: "Step-by-step guided process w/ user control"
+--dry-run: "Preview changes without execution"
+--force: "Override safety checks & confirmations"
 
-Examples:
-- `/user:git --status` - Comprehensive repo status
-- `/user:git --commit "Add feature"` - Create commit
-- `/user:git --branch feature/ui` - Create & switch→branch  
-- `/user:git --sync` - Fetch, pull & push
-- `/user:git --merge develop --think` - Merge w/ conflict analysis
+## Command-Specific Flags
 
-Git operations:
+**Core Operations:**
+- `--status`: Comprehensive repository status with branch and remote information
+- `--commit [message]`: Create commit with automated staging and validation
+- `--branch [name]`: Create, switch, or manage branches
+- `--sync`: Fetch, pull, and push with conflict resolution
+- `--merge [branch]`: Merge branches with conflict analysis
+- `--stash [message]`: Stash management with descriptive messages
 
-**--status:** Working tree status | Current branch & upstream | Stashed changes | Recent commits (5) | Unpushed commits | Remote status
+**Advanced Operations:**
+- `--history`: Detailed commit history with filtering options
+- `--checkpoint [message]`: Create tagged state snapshots for rollback
+- `--rollback [checkpoint]`: Rollback to specific checkpoint safely
+- `--rebase [branch]`: Interactive or automatic rebase operations
 
-**--commit:** Stage files (-a→all) | Generate message if missing | Follow conventions | Verify tests pass | Create chkpt | GPG sign if configured
+**Branch Management:**
+- `--list`: Show all branches with descriptions and status
+- `--delete [branch]`: Delete merged branches safely
+- `--track [remote/branch]`: Set up branch tracking
 
-**--branch:** Create from HEAD/base | Switch to existing | --delete→remove merged | --list→show all w/ descriptions | Auto-track remote | Protect current/main
+**Safety & Validation:**
+- `--verify`: Verify repository state and integrity
+- `--cleanup`: Clean up stale branches and references
+- `--backup`: Create backup before risky operations
 
-**--sync:** Fetch all remotes | Pull w/ rebase | Push to tracked remote | Handle auth | Resolve conflicts | Update submodules
+## Examples
+- `/git --status` → Comprehensive repository status
+- `/git --commit "Add authentication feature"` → Create commit with message
+- `/git --branch feature/ui-redesign` → Create and switch to branch
+- `/git --sync --verify` → Sync with remote and verify state
+- `/git --merge develop --think` → Merge with conflict analysis
+- `/git --checkpoint "Before major refactor"` → Create safety checkpoint
+- `/git --history --author "john" --since "2024-01-01"` → Filtered history
 
-**--merge:** Fetch target branch | Check conflicts | Create chkpt | Use merge strategy | Handle conflicts interactively | Verify results
+## Git Operations
 
-**--stash:** Save w/ message | List w/ timestamps | Apply/pop specific | Drop old/unnecessary | Handle conflicts
+**Status Operation (--status):**
+- Working tree status and staged changes
+- Current branch and upstream tracking
+- Stashed changes with timestamps
+- Recent commits (last 5) with summaries
+- Unpushed commits count
+- Remote repository status
 
-**--history:** Commit log w/ formats | Filter by author/date/path | Branch topology | Search messages | File change stats
+**Commit Operation (--commit):**
+- Automatic staging of modified files
+- Generate conventional commit message if missing
+- Pre-commit hooks and validation
+- Test verification before commit
+- Create automatic checkpoint
+- GPG signing if configured
 
-**--checkpoint:** Tagged state snapshot | Descriptive message | Store in manifest | Enable rollback
+**Branch Management (--branch):**
+- Create new branch from HEAD or specified base
+- Switch to existing branch with safety checks
+- Delete merged branches with verification
+- List all branches with descriptions
+- Automatic remote tracking setup
+- Protection for main/master branches
 
-**--rollback:** List available chkpts | Verify safety | Pre-rollback chkpt | Execute rollback | Verify state
+**Sync Operations (--sync):**
+- Fetch from all configured remotes
+- Pull with rebase to maintain clean history
+- Push to tracked remote branch
+- Handle authentication automatically
+- Resolve merge conflicts interactively
+- Update submodules if present
 
-@see shared/git-workflow.yml ∀ best practices
-@see shared/checkpoint.yml ∀ checkpoint system
-@see shared/error-handling.yml ∀ safety checks
+**Merge Operations (--merge):**
+- Fetch target branch before merging
+- Analyze potential conflicts
+- Create checkpoint before merge
+- Use appropriate merge strategy
+- Handle conflicts with interactive resolution
+- Verify merge results
 
-Workflow: Check status→Create chkpt→Execute→Verify→Sync
+**Stash Management (--stash):**
+- Save changes with descriptive message
+- List stashes with timestamps and summaries
+- Apply or pop specific stash entries
+- Drop old or unnecessary stashes
+- Handle conflicts during stash application
+
+**History Operations (--history):**
+- Formatted commit log with customizable output
+- Filter by author, date, or file path
+- Branch topology visualization
+- Search commit messages
+- File change statistics
+
+**Checkpoint System (--checkpoint):**
+- Create tagged state snapshots
+- Store with descriptive messages
+- Maintain checkpoint manifest
+- Enable safe rollback operations
+- Track checkpoint metadata
+
+**Rollback Operations (--rollback):**
+- List available checkpoints with details
+- Verify rollback safety
+- Create pre-rollback checkpoint
+- Execute rollback with validation
+- Verify final repository state
+
+## Workflow Patterns
+
+**Standard Development Workflow:**
+1. Check status → Understand current state
+2. Create checkpoint → Safety backup
+3. Execute operation → Perform git action
+4. Verify results → Validate changes
+5. Sync with remote → Update shared repository
+
+**Feature Development:**
+1. `git --status` → Check current state
+2. `git --branch feature/new-feature` → Create feature branch
+3. Development work...
+4. `git --commit "Implement feature"` → Commit changes
+5. `git --sync` → Push to remote
+6. `git --merge main` → Integrate with main
+
+**Safe Operations:**
+- Always create checkpoints before risky operations
+- Verify repository state after major changes
+- Use interactive mode for conflict resolution
+- Maintain clean commit history with conventional messages
+
+## Deliverables
+- **Updated Repository State**: Clean, consistent git history
+- **Branch Management**: Organized branch structure
+- **Remote Synchronization**: Up-to-date remote repositories
+- **Audit Trail**: Complete history of operations
+- **Safety Checkpoints**: Rollback points for recovery
+
+## Research Requirements
+External_Library_Research:
+  - Identify library/framework mentioned
+  - Context7 lookup for official documentation
+  - Verify API patterns and examples
+  - Check version compatibility
+  - Document findings in implementation
+Pattern_Research:
+  - Search existing codebase for similar patterns
+  - Magic component search if UI-related
+  - WebSearch for official documentation
+  - Validate approach with Sequential thinking
+  - Document pattern choice rationale
+API_Integration_Research:
+  - Official documentation lookup
+  - Authentication requirements
+  - Rate limiting and error handling
+  - SDK availability and examples
+  - Integration testing approach
+
+## Lifecycle
+Pre_Execution:
+  Risk_Assessment: Calculate risk score 1-10 based on data loss potential, irreversibility, scope, security
+  Environment_Validation: Check required tools, permissions, resources, dependencies
+  State_Preparation: Create checkpoint before risky ops, cache previous results
+During_Execution:
+  Progress_Monitoring: Track operation progress, resource usage, error rates, token consumption
+  Dynamic_Optimization: Adjust parallelism, switch strategies, cache results, fallback to native
+  Error_Handling: Detect errors immediately, classify transient vs permanent, retry/fallback/halt
+Post_Execution:
+  Verification: Confirm expected outcomes achieved, no side effects, state consistent
+  Cleanup: Remove temp files, locks, cached data; update audit logs, metrics, docs
+  Reporting: Generate success/failure report, performance metrics, recommendations
+
+## Integration Patterns
+
+**Quality Assurance:**
+- Pre-commit hooks for code quality
+- Test verification before commits
+- Conventional commit message enforcement
+- Branch protection rules
+
+**Team Collaboration:**
+- Consistent branching strategies
+- Merge request workflows
+- Code review integration
+- Conflict resolution procedures
+
+## Troubleshooting
+- **Merge Conflicts**: Use `--merge --interactive` for guided resolution
+- **Complex History**: Apply `--history --visual` for topology understanding
+- **Repository Issues**: Use `--verify --cleanup` for maintenance
+- **Rollback Needs**: Apply `--rollback` with checkpoint selection
+
+## Success Messages
+✅ {operation} completed successfully
+📝 Created: {file_path}
+✏ Updated: {file_path}
+✨ Task completed: {task_title}
 
-Deliverables: Updated repo state, commit history, branch mgmt, remote sync.