📚 Complete documentation restructure and content cleanup

- Standardize documentation structure across all sections
- Fix CLI confusion and streamline user guidance
- Remove fictional content and align with actual functionality
- Improve technical architecture documentation
- Update installation and quick-start guides
- Enhance reference materials and examples

🤖 Generated with [Claude Code](https://claude.ai/code)

Co-Authored-By: Claude <noreply@anthropic.com>

Docs/Reference/mcp-server-guide.md

@@ -517,7 +517,7 @@ npm update -g
 
 # Verification
 time node -e "console.log('Node.js speed test')"
-# Should complete quickly
+# Should complete successfully
 ```
 
 **Issue: MCP Server Memory Leaks**
@@ -529,7 +529,7 @@ top | grep node  # Monitor Node.js processes
 ps aux --sort=-%mem | head -10
 
 # Solution 1: Regular Claude Code session restarts
-# Restart sessions every few hours during heavy usage
+# Restart sessions periodically during heavy usage
 
 # Solution 2: Monitor specific servers
 htop  # Monitor individual MCP server processes