Remove profile system and make custom two-stage selection default

- Remove profiles/ directory with all profile JSON files
- Update install.py to remove profile CLI options and simplify flow
- Make interactive two-stage selection (MCP → Components) the default
- Remove ConfigManager.load_profile() method
- Update documentation to reflect simplified installation process
- Add CLAUDEMdManager for intelligent CLAUDE.md import management
- Components now install to root directory with organized @imports
- Preserve user customizations while managing framework imports

This simplifies the installation experience while providing users
direct control over what gets installed through the intuitive
two-stage selection process.

🤖 Generated with [Claude Code](https://claude.ai/code)

Co-Authored-By: Claude <noreply@anthropic.com>

setup/components/core.py

@@ -7,6 +7,7 @@ from pathlib import Path
 import shutil
 
 from ..base.component import Component
+from ..managers.claude_md_manager import CLAUDEMdManager
 
 class CoreComponent(Component):
     """Core SuperClaude framework files component"""
@@ -77,6 +78,15 @@ class CoreComponent(Component):
             dir_path = self.install_dir / dirname
             if not self.file_manager.ensure_directory(dir_path):
                 self.logger.warning(f"Could not create directory: {dir_path}")
+        
+        # Update CLAUDE.md with core framework imports
+        try:
+            manager = CLAUDEMdManager(self.install_dir)
+            manager.add_imports(self.component_files, category="Core Framework")
+            self.logger.info("Updated CLAUDE.md with core framework imports")
+        except Exception as e:
+            self.logger.warning(f"Failed to update CLAUDE.md with core framework imports: {e}")
+            # Don't fail the whole installation for this
 
         return True
 

setup/components/mcp_docs.py

@@ -6,6 +6,7 @@ from typing import Dict, List, Tuple, Optional, Any
 from pathlib import Path
 
 from ..base.component import Component
+from ..managers.claude_md_manager import CLAUDEMdManager
 
 
 class MCPDocsComponent(Component):
@@ -13,7 +14,7 @@ class MCPDocsComponent(Component):
     
     def __init__(self, install_dir: Optional[Path] = None):
         """Initialize MCP docs component"""
-        super().__init__(install_dir, Path("mcp"))
+        super().__init__(install_dir, Path(""))
         
         # Map server names to documentation files
         self.server_docs_map = {
@@ -57,7 +58,7 @@ class MCPDocsComponent(Component):
                 if server_name in self.server_docs_map:
                     doc_file = self.server_docs_map[server_name]
                     source = source_dir / doc_file
-                    target = self.install_component_subdir / doc_file
+                    target = self.install_dir / doc_file
                     if source.exists():
                         files.append((source, target))
                         self.logger.debug(f"Will install documentation for {server_name}: {doc_file}")
@@ -143,6 +144,15 @@ class MCPDocsComponent(Component):
             self.settings_manager.update_metadata(metadata_mods)
             self.logger.info("Updated metadata with MCP docs component registration")
             
+            # Update CLAUDE.md with MCP documentation imports
+            try:
+                manager = CLAUDEMdManager(self.install_dir)
+                manager.add_imports(self.component_files, category="MCP Documentation")
+                self.logger.info("Updated CLAUDE.md with MCP documentation imports")
+            except Exception as e:
+                self.logger.warning(f"Failed to update CLAUDE.md with MCP documentation imports: {e}")
+                # Don't fail the whole installation for this
+            
             return True
         except Exception as e:
             self.logger.error(f"Failed to update metadata: {e}")

setup/components/modes.py

@@ -6,6 +6,7 @@ from typing import Dict, List, Tuple, Optional, Any
 from pathlib import Path
 
 from ..base.component import Component
+from ..managers.claude_md_manager import CLAUDEMdManager
 
 
 class ModesComponent(Component):
@@ -13,7 +14,7 @@ class ModesComponent(Component):
     
     def __init__(self, install_dir: Optional[Path] = None):
         """Initialize modes component"""
-        super().__init__(install_dir, Path("modes"))
+        super().__init__(install_dir, Path(""))
     
     def get_metadata(self) -> Dict[str, str]:
         """Get component metadata"""
@@ -77,6 +78,15 @@ class ModesComponent(Component):
             self.settings_manager.update_metadata(metadata_mods)
             self.logger.info("Updated metadata with modes component registration")
             
+            # Update CLAUDE.md with mode imports
+            try:
+                manager = CLAUDEMdManager(self.install_dir)
+                manager.add_imports(self.component_files, category="Behavioral Modes")
+                self.logger.info("Updated CLAUDE.md with mode imports")
+            except Exception as e:
+                self.logger.warning(f"Failed to update CLAUDE.md with mode imports: {e}")
+                # Don't fail the whole installation for this
+            
             return True
         except Exception as e:
             self.logger.error(f"Failed to update metadata: {e}")