feat(db)!: SnapOtter 2.0 phase 1 foundation: postgres, migrator, compose stack (#216)

* feat(infra): add dev compose stack with postgres and redis

* fix(infra): comment dev env defaults until wired; harden dev compose restart and start_period

* chore(deps): add pg driver and testcontainers for postgres migration

* feat(db): translate schema to drizzle pg-core (timestamptz, boolean, pgEnum, jsonb)

Schema translation (apps/api/src/db/schema.ts):
- sqlite-core -> pg-core, all 10 tables preserved 1:1
- integer(mode:'timestamp') -> timestamp({ withTimezone: true })
- integer(mode:'boolean') -> boolean
- jobs.status text enum -> pgEnum('job_status') with same 4 values
- 7 columns changed from text to jsonb: jobs.inputFiles, jobs.settings,
  pipelines.steps, apiKeys.permissions, roles.permissions,
  auditLog.details, userFiles.toolChain
- settings.value stays text, jobs.error stays text, jobs.progress stays real

jsonb call-site sweep (removed JSON.stringify on writes, JSON.parse on reads):
- apps/api/src/routes/roles.ts: permissions read/write (3 sites)
- apps/api/src/routes/api-keys.ts: permissions write + read (2 sites)
- apps/api/src/routes/audit-log.ts: details read (1 site)
- apps/api/src/routes/pipeline.ts: steps write + read (2 sites)
- apps/api/src/routes/progress.ts: inputFiles write (2 sites)
- apps/api/src/routes/tool-factory.ts: toolChain read + write (2 sites)
- apps/api/src/routes/user-files.ts: toolChain read + write (4 sites)
- apps/api/src/permissions.ts: roles.permissions read (1 site)
- apps/api/src/lib/audit.ts: details write (1 site)
- apps/api/src/plugins/auth.ts: apiKeys.permissions read (1 site)

* refactor(db): type jsonb columns via $type and note raw CTE conversion requirements

* feat(db): archive sqlite migrations and generate postgres baseline

* chore(db): dockerignore legacy migrations, add archive breadcrumb, fix trailing newline

* feat(db): pg pool connection, advisory-locked boot migrations, DATABASE_URL config

* fix(db): friendly fatal on unreachable postgres, idempotent closeDb, lock-key convention note

* refactor(db): async drizzle calls in plugins, lib, permissions

* fix(api): analytics never throws, typed permission guard, single-query session invalidation

* refactor(db): async drizzle calls across all routes and bootstrap

Convert every route file and index.ts from sync SQLite drizzle
patterns to async node-postgres drizzle:

- .all() removed (bare await on select)
- .get() converted to destructured [row] = await ...
- .run() removed (bare await on insert/update/delete)
- .changes replaced with .rowCount (null-guarded) in progress.ts
- sqlite import removed from user-files.ts; raw CTEs converted to
  await db.execute(sql`...`) with postgres-dialect recursive CTEs
- ChainRow types updated: tool_chain is parsed jsonb (string[] | null),
  created_at is Date (timestamptz) with no * 1000 conversion
- All requirePermission() guard calls awaited (security: unawaited
  async guard returns truthy Promise, bypassing permission check)
- All hasEffectivePermission() and getPermissions() calls awaited
- All auditLog() calls awaited (preserves write-before-response order)
- trackEvent() and captureException() left un-awaited (fire-and-forget
  by design, guaranteed never-throw)
- ensureAnonymousUser(), startCleanupCron(), recoverStaleJobs() awaited
  in bootstrap sequence
- ensureInstanceId() and ensureDefaultSettings() made async

Files converted: 14 (index.ts + 12 route files + tools/index.ts)

* fix(db): await async checkStorageQuota in user-files upload/save routes

* fix(db): await checkStorageQuota in save-result route (missed second call site)

* feat(db): sqlite-to-postgres migrator with CLI and first-boot import

* fix(db): migrator error context, honest force semantics, boot-hook fatal, null-variance tests

* test: run suite against per-file postgres databases via testcontainers

- Add tests/global-setup.ts: spins up a Postgres testcontainer,
  creates a migrated template database once per vitest run.
- Rewrite tests/setup/per-fork-env.ts: each test file (forks pool)
  clones the template into its own database via CREATE DATABASE ...
  TEMPLATE, preserving the same per-file isolation granularity.
- Update vitest.config.ts: add globalSetup, pg alias, update comment.
- Fix tests/integration/test-server.ts: remove DB_PATH mkdir, async
  runMigrations, async db operations, remove SQLite WAL checkpoint.
- Fix 21 unit test db/index mocks: add pool and closeDb exports.
- Fix 8 unit test files: add async/await for now-async permission,
  audit, and analytics functions.
- Fix 18 integration test files: convert sync .run()/.all()/.get()
  to async drizzle patterns, add async to callbacks.
- Production change: apps/api/src/routes/teams.ts: cast COUNT(*)
  to ::int so Postgres returns a number instead of bigint string.

* fix(db): seed built-in roles, reject NUL bytes, cast COUNT, serialize job persists

- Seed built-in roles (admin, editor, user) at boot via ensureBuiltinRoles()
  with onConflictDoNothing, restoring data that legacy SQLite migration 0007
  provided via INSERT statements (the pg baseline is DDL-only).
- Reject NUL bytes in login credentials with 401 (postgres rejects \x00 in
  text columns; valid usernames never contain NUL, matching 1.x behavior).
- Cast COUNT(*)::int in user-files, audit-log, and roles listing queries so
  postgres returns a JS number instead of bigint-as-string.
- Serialize fire-and-forget job progress DB writes per jobId so the final
  "completed" status is never overwritten by a late-arriving "processing"
  write (race condition exposed by async postgres round-trips).

* test: fix teams race, seed roles in test server, poll for job status

- Add missing await to resetTeams() in teams PUT beforeEach (the async
  delete raced with the subsequent insert under postgres).
- Call ensureBuiltinRoles() in test server bootstrap so integration tests
  have the same built-in roles as production.
- Replace fixed 100ms flushPersist delay with a polling helper that waits
  for terminal job status, eliminating timing-dependent failures caused by
  postgres network round-trip latency.

* test: make heic temp-file cleanup assertion resilient to concurrent workers

Use a set-based diff instead of raw file count when checking that
decodeHeic cleans up temp files. Other concurrent test workers can
create heic-in-*/heic-out-* files in the shared tmpdir, inflating the
"after" count and causing spurious failures under full-suite load.

* fix(db): align builtin-role seed to post-0010 legacy state; test polish

* feat(docker): three-container compose (app, postgres, redis) with boot wait and migrations

* fix(docker): set TEST_DATABASE_URL so containerized tests skip testcontainers

* chore(docker): test compose project name, clearer 1.x upgrade comment, unref probe timer

* feat(enterprise): enforce D15 license boundary; move s3 storage into packages/enterprise

* fix(enterprise): restore lazy aws-sdk loading; community installs load no s3 code at boot

* fix(enterprise): boundary check catches dynamic imports; document getS3 concurrency

* feat(db)!: SnapOtter 2.0 phase 1 foundation: postgres, migrator, compose stack

BREAKING CHANGE: SQLite is no longer the runtime database. Deployments now
require Postgres (and Redis, used from phase 2). Existing installs migrate
with SQLITE_MIGRATE_PATH or 'pnpm --filter @snapotter/api migrate:sqlite'.

* fix(ci): postgres service + fresh e2e database per run; ignore unfixable torch CVE-2025-3000

apps/api/drizzle/meta/0003_snapshot.json

@@ -1,386 +0,0 @@
-{
-  "version": "6",
-  "dialect": "sqlite",
-  "id": "c1a2b3d4-e5f6-7890-abcd-ef1234567890",
-  "prevId": "b73098db-4ef1-44e2-834f-9114a4da4e77",
-  "tables": {
-    "api_keys": {
-      "name": "api_keys",
-      "columns": {
-        "id": {
-          "name": "id",
-          "type": "text",
-          "primaryKey": true,
-          "notNull": true,
-          "autoincrement": false
-        },
-        "user_id": {
-          "name": "user_id",
-          "type": "text",
-          "primaryKey": false,
-          "notNull": true,
-          "autoincrement": false
-        },
-        "key_hash": {
-          "name": "key_hash",
-          "type": "text",
-          "primaryKey": false,
-          "notNull": true,
-          "autoincrement": false
-        },
-        "key_prefix": {
-          "name": "key_prefix",
-          "type": "text",
-          "primaryKey": false,
-          "notNull": false,
-          "autoincrement": false
-        },
-        "name": {
-          "name": "name",
-          "type": "text",
-          "primaryKey": false,
-          "notNull": true,
-          "autoincrement": false,
-          "default": "'Default API Key'"
-        },
-        "created_at": {
-          "name": "created_at",
-          "type": "integer",
-          "primaryKey": false,
-          "notNull": true,
-          "autoincrement": false
-        },
-        "last_used_at": {
-          "name": "last_used_at",
-          "type": "integer",
-          "primaryKey": false,
-          "notNull": false,
-          "autoincrement": false
-        }
-      },
-      "indexes": {},
-      "foreignKeys": {
-        "api_keys_user_id_users_id_fk": {
-          "name": "api_keys_user_id_users_id_fk",
-          "tableFrom": "api_keys",
-          "tableTo": "users",
-          "columnsFrom": ["user_id"],
-          "columnsTo": ["id"],
-          "onDelete": "cascade",
-          "onUpdate": "no action"
-        }
-      },
-      "compositePrimaryKeys": {},
-      "uniqueConstraints": {},
-      "checkConstraints": {}
-    },
-    "jobs": {
-      "name": "jobs",
-      "columns": {
-        "id": {
-          "name": "id",
-          "type": "text",
-          "primaryKey": true,
-          "notNull": true,
-          "autoincrement": false
-        },
-        "type": {
-          "name": "type",
-          "type": "text",
-          "primaryKey": false,
-          "notNull": true,
-          "autoincrement": false
-        },
-        "status": {
-          "name": "status",
-          "type": "text",
-          "primaryKey": false,
-          "notNull": true,
-          "autoincrement": false,
-          "default": "'queued'"
-        },
-        "progress": {
-          "name": "progress",
-          "type": "real",
-          "primaryKey": false,
-          "notNull": true,
-          "autoincrement": false,
-          "default": 0
-        },
-        "input_files": {
-          "name": "input_files",
-          "type": "text",
-          "primaryKey": false,
-          "notNull": true,
-          "autoincrement": false
-        },
-        "output_path": {
-          "name": "output_path",
-          "type": "text",
-          "primaryKey": false,
-          "notNull": false,
-          "autoincrement": false
-        },
-        "settings": {
-          "name": "settings",
-          "type": "text",
-          "primaryKey": false,
-          "notNull": false,
-          "autoincrement": false
-        },
-        "error": {
-          "name": "error",
-          "type": "text",
-          "primaryKey": false,
-          "notNull": false,
-          "autoincrement": false
-        },
-        "created_at": {
-          "name": "created_at",
-          "type": "integer",
-          "primaryKey": false,
-          "notNull": true,
-          "autoincrement": false
-        },
-        "completed_at": {
-          "name": "completed_at",
-          "type": "integer",
-          "primaryKey": false,
-          "notNull": false,
-          "autoincrement": false
-        }
-      },
-      "indexes": {},
-      "foreignKeys": {},
-      "compositePrimaryKeys": {},
-      "uniqueConstraints": {},
-      "checkConstraints": {}
-    },
-    "pipelines": {
-      "name": "pipelines",
-      "columns": {
-        "id": {
-          "name": "id",
-          "type": "text",
-          "primaryKey": true,
-          "notNull": true,
-          "autoincrement": false
-        },
-        "user_id": {
-          "name": "user_id",
-          "type": "text",
-          "primaryKey": false,
-          "notNull": false,
-          "autoincrement": false
-        },
-        "name": {
-          "name": "name",
-          "type": "text",
-          "primaryKey": false,
-          "notNull": true,
-          "autoincrement": false
-        },
-        "description": {
-          "name": "description",
-          "type": "text",
-          "primaryKey": false,
-          "notNull": false,
-          "autoincrement": false
-        },
-        "steps": {
-          "name": "steps",
-          "type": "text",
-          "primaryKey": false,
-          "notNull": true,
-          "autoincrement": false
-        },
-        "created_at": {
-          "name": "created_at",
-          "type": "integer",
-          "primaryKey": false,
-          "notNull": true,
-          "autoincrement": false
-        }
-      },
-      "indexes": {},
-      "foreignKeys": {
-        "pipelines_user_id_users_id_fk": {
-          "name": "pipelines_user_id_users_id_fk",
-          "tableFrom": "pipelines",
-          "tableTo": "users",
-          "columnsFrom": ["user_id"],
-          "columnsTo": ["id"],
-          "onDelete": "cascade",
-          "onUpdate": "no action"
-        }
-      },
-      "compositePrimaryKeys": {},
-      "uniqueConstraints": {},
-      "checkConstraints": {}
-    },
-    "sessions": {
-      "name": "sessions",
-      "columns": {
-        "id": {
-          "name": "id",
-          "type": "text",
-          "primaryKey": true,
-          "notNull": true,
-          "autoincrement": false
-        },
-        "user_id": {
-          "name": "user_id",
-          "type": "text",
-          "primaryKey": false,
-          "notNull": true,
-          "autoincrement": false
-        },
-        "expires_at": {
-          "name": "expires_at",
-          "type": "integer",
-          "primaryKey": false,
-          "notNull": true,
-          "autoincrement": false
-        },
-        "created_at": {
-          "name": "created_at",
-          "type": "integer",
-          "primaryKey": false,
-          "notNull": true,
-          "autoincrement": false
-        }
-      },
-      "indexes": {},
-      "foreignKeys": {
-        "sessions_user_id_users_id_fk": {
-          "name": "sessions_user_id_users_id_fk",
-          "tableFrom": "sessions",
-          "tableTo": "users",
-          "columnsFrom": ["user_id"],
-          "columnsTo": ["id"],
-          "onDelete": "cascade",
-          "onUpdate": "no action"
-        }
-      },
-      "compositePrimaryKeys": {},
-      "uniqueConstraints": {},
-      "checkConstraints": {}
-    },
-    "settings": {
-      "name": "settings",
-      "columns": {
-        "key": {
-          "name": "key",
-          "type": "text",
-          "primaryKey": true,
-          "notNull": true,
-          "autoincrement": false
-        },
-        "value": {
-          "name": "value",
-          "type": "text",
-          "primaryKey": false,
-          "notNull": true,
-          "autoincrement": false
-        },
-        "updated_at": {
-          "name": "updated_at",
-          "type": "integer",
-          "primaryKey": false,
-          "notNull": true,
-          "autoincrement": false
-        }
-      },
-      "indexes": {},
-      "foreignKeys": {},
-      "compositePrimaryKeys": {},
-      "uniqueConstraints": {},
-      "checkConstraints": {}
-    },
-    "users": {
-      "name": "users",
-      "columns": {
-        "id": {
-          "name": "id",
-          "type": "text",
-          "primaryKey": true,
-          "notNull": true,
-          "autoincrement": false
-        },
-        "username": {
-          "name": "username",
-          "type": "text",
-          "primaryKey": false,
-          "notNull": true,
-          "autoincrement": false
-        },
-        "password_hash": {
-          "name": "password_hash",
-          "type": "text",
-          "primaryKey": false,
-          "notNull": true,
-          "autoincrement": false
-        },
-        "role": {
-          "name": "role",
-          "type": "text",
-          "primaryKey": false,
-          "notNull": true,
-          "autoincrement": false,
-          "default": "'user'"
-        },
-        "must_change_password": {
-          "name": "must_change_password",
-          "type": "integer",
-          "primaryKey": false,
-          "notNull": true,
-          "autoincrement": false,
-          "default": true
-        },
-        "created_at": {
-          "name": "created_at",
-          "type": "integer",
-          "primaryKey": false,
-          "notNull": true,
-          "autoincrement": false
-        },
-        "updated_at": {
-          "name": "updated_at",
-          "type": "integer",
-          "primaryKey": false,
-          "notNull": true,
-          "autoincrement": false
-        },
-        "team": {
-          "name": "team",
-          "type": "text",
-          "primaryKey": false,
-          "notNull": true,
-          "autoincrement": false,
-          "default": "'Default'"
-        }
-      },
-      "indexes": {
-        "users_username_unique": {
-          "name": "users_username_unique",
-          "columns": ["username"],
-          "isUnique": true
-        }
-      },
-      "foreignKeys": {},
-      "compositePrimaryKeys": {},
-      "uniqueConstraints": {},
-      "checkConstraints": {}
-    }
-  },
-  "views": {},
-  "enums": {},
-  "_meta": {
-    "schemas": {},
-    "tables": {},
-    "columns": {}
-  },
-  "internal": {
-    "indexes": {}
-  }
-}